ENZYMES
70 flashcards · Biology · by mi_mika
chemical reactions that transfer electrons between two chemical species with the help of enzymes reactions are the driving force behind all biological reactions
Oxidation Reactions or Enzymatic Oxidation
An enzyme that catalyses an oxidation reaction Types: peroxidases & oxidases increase the rate at which ATP is produced aerobically
oxidative enzyme
uses hydrogen peroxide a group of enzymes that catalyze the oxidation of a substrate by hydrogen peroxide or an organic peroxide
peroxidases
uses a molecular oxygen an enzyme which promotes the transfer of a hydrogen atom from a particular substrate to an oxygen molecule, forming water or hydrogen peroxide.
oxidases
Refers to the various chemical reactions that take place in organisms to allow maintenance of normal functions and survival Can also refer to the breaking down of food and for digestion
Metabolism
What type of digestion is teeth grinding on food?
Mechanical Digestion
What type of digestion is the use of stomach Acid and salivary-Amylase?
Chemical Digestion
the physical process of breaking food down into smaller pieces so that digestive enzymes can act on it
mechanical digestion
the process of breaking down food into smaller molecules (e.g., carbohydrates, proteins, and fats) using enzymes
chemical digestion
enzyme that breaks down starch
Salivary-Amylase
breaking down complex to simple Refers to the series of reactions that involve breaking down larger or more complex molecules into simpler ones
Catabolism
breaking down simple to complex Refers to the series of reactions that involve synthesizing more complex molecules from simpler ones
Anabolism
a reactant loses electrons during a reaction
oxidation
a reactant accumulates or gains electrons during a reaction
reduction
aka. oxidation-reduction reaction a chemical reaction that involves the transfer of electrons between two species
Redox Reactions
catalyze redox reactions between different molecules
Redox enzymes
the one that says whether an election is lost or gained a measure of the tendency of a chemical species to acquire electrons from or lose electrons to an electrode and thereby be reduced or oxidised respectively
Redox potential
a chemical rule of thumb that reflects the theory that main-group elements tend to bond in such a way that each atom has eight electrons in its valence shell, giving it the same electronic configuration as a noble gas the tendency of atoms to prefer to have eight electrons in the valence shell
Octet Rule
a chemical bond formed when one atom gives up one or more electrons to another atom
Ionic Bond
A chemical bond formed when electrons are shared between two atoms
Covalent Bond
relies on breaking the bonds once you break the bonds, it results to energy (free energy)
Redox Process
Higher energy state will be converted into lower energy state (basically there’s an energy release)
Spontaneous or Exergonic Reaction
Low energy state will be converted into high energy state (basically it needs energy)
Nonspontaneous or Nonexergonic Reaction
Examples of Redox
Aerobic Respiration Oxidative Phosphorylation Free Radical Reactions Photosynthesis
using oxygen molecules to break down the food so that you can utilize it in the form of energy for the survival of humans, animals, fungi, and plants
Aerobic respiration
a cellular process that harnesses the reduction of oxygen to generate high-energy phosphate bonds in the form of adenosine triphosphate (ATP) aka. electron transport-linked phosphorylation or terminal oxidation a metabolic process that uses oxygen to create adenosine triphosphate (ATP)
Oxidative phosphorylation
a chemical reaction that involves free radicals, which are highly reactive atoms with an unpaired electron undergo addition to carbon-carbon double bonds
Free Radical Reactions
a chemical process that uses light energy to convert carbon dioxide and water into oxygen and sugars end product: glucose and oxygen {glucose (C6H12O6), oxygen (O2) and water (H2O)}
Photosynthesis
Aerobic Respiration Processes
Glycolysis Krebs Cycle
Process of splitting of glucose molecules in order to generate energy End product: 2 ATP, 2 pyruvate, 2 NADH Oxidation of glucose, the reduction of NADH (NADH → NAD) — losing of hydrogen sya kaya mawawala H sa NADH Pyruvate --- there's remaining electrons
Glycolysis
End product of Glycolysis
2 ATP, 2 pyruvate, and 2 NADH
Involves oxygen and the use of the pyruvate products of glycolysis Pyruvate - product of glycolisis… that part will undergo krebs cycle there's 38 ATP and 2 will be used, that's why there will only be 36
Krebs Cycle
End product of Krebs Cycle (Citric Acid Cycle)
4CO2 + 6 NADH + 2 FADH2 + 2 ATP
the process of ions moving across a semipermeable membrane, from an area of high ion concentration to an area of low ion concentration the movement of hydrogen ions across the membrane via ATP synthase
Chemiosmosis
_________ and the ______________ are a part of the process of oxidative phosphorylation.
Chemiosmosis and the electron transport chain
the process by which glucose is broken down to produce energy and pyruvate the other name of glycolysis glycolytic pathway used by humans (and yeast)
Embden-Meyerhof pathway
a coenzyme central to metabolism an essential pyridine nucleotide that serves as an essential cofactor and substrate for a number of critical cellular processes involved in oxidative phosphorylation and ATP production, DNA repair, epigenetically modulated gene expression, intracellular calcium signaling, and immunological functions
Nicotinamide adenine dinucleotide (NAD)
a simple classical model of the thermodynamic behavior of gases states that gas particles are in constant motion and exhibit perfectly elastic collisions--- can be used to explain both Charles's and Boyle's laws
Kinetic Molecular Theory
molecules tend to behave differently when exposed to _________
high temperature
High temperature results in bonds ______. These bonds are what keep molecules together.
bonds breaking
Influencing the activity of an enzyme means that its reaction rate may either increase or decrease as a result Cells maintain a proper internal environment because deviations from optimal conditions may greatly impact the biochemical reactions that are supposed to take place
Optimal enzyme activity
High concentration leads to ________
high collisions
Low concentration leads to ________
low collisions
Enzymes are ______: meaning they speed up a certain process
catalysts
when a given concentration of enzyme has reached its maximum reaction rate, increasing the amount of substrate will not affect the reaction rate any further
saturation point
_________ only occurs in catalyzed reactions
saturation
The contempt of saturation level does not apply to _________ reactions. If a chemical reaction does not require an enzyme, it will not reach a saturation point
uncatalyzed
Factors affecting enzyme activity
Temperature pH Substrate Concentration Enzyme Concentration
Also includes uncatalyzed reactions When _______ rises, molecules tend to be excited. And once they’re excited, collision is at a high rate. The reaction rate reaches its peak at the optimum ________ a direct relationship
Temperature
Raising temperature generally ___________ a reaction
Speeds up
lowering temperature ________ a reaction
slows down
_____________ can cause an enzyme to lose its shape, denature, and cause it to stop working
extremely high temperature
the process by which proteins lose their folded structure and biological activity structural or conformational changes from the native structure without alteration of the amino acid sequence the destruction of the tertiary structure of a protein molecule and the formation of random polypeptide chains
protein denaturation
Each enzyme has an optimum ______ range, and changing the ______ outside of this range will slow enzyme activity
pH
Unfavorable pH alterations may result in a ________ in enzyme activity, with the more extreme changes in pH rendering the enzyme dysfunctional
decrease
an enzyme that works in relatively acidic conditions and usually seen in the stomach an enzyme in the stomach that breaks down proteins into smaller peptides and amino acids
Pepsin
an enzyme that functions at basic pH a digestive enzyme that breaks down proteins into smaller pieces usually produced in the pancreas and secreted into the small intestine
Trypsin
The highest reaction rates can be achieved when all the enzymes have available substrates for binding and catalysis Increasing substrate or enzyme will not increase the reaction
Substrate concentration
terminates catalytic reactions molecules that interact with enzymes (temporary or permanent) in some way and reduce the rate of an enzyme-catalyzed reaction or prevent enzymes from working in a normal manner
Enzyme Inhibitors
Enzyme Regulators
Inhibitors Chemical Modifications
Types of Inhibitors
Competitive Noncompetitive
these inhibitors compete with the substrates for binding to the enzyme’s active site
Competitive Inhibitors
these inhibitors bind to enzymes outside of the active site. When these bindings occur, the enzyme’s structure may become modified and can reduce the active site’s capacity to bind to substrates
Noncompetitive Inhibitors
regulate enzyme activity by changing the structure of the enzyme ex: covalent modifications and allosteric control
Chemical Modifications
Phosphate groups can bind to enzyme kinase through ___________
Phosphorylation
How to reverse the binding of phosphate groups to enzyme kinase?
Protein phosphatase or dephosphorylation
the addition of a phosphoryl (PO3) group to a molecule the attachment of a phosphate group to a molecule or an ion
Phosphorylation
a phosphatase enzyme that removes a phosphate group from the phosphorylated amino acid residue of its substrate protein
protein phosphatase
enzymes that cleave the phosphoric ester bond to generate an alcohol and a free phosphate ion, play vital roles in biology since dephosphorylation and the reverse process are essential to cell regulation and cell signaling
role of phosphatase enzymes
the process of removing a phosphate group from an organic compound a reversible process that can occur in proteins, DNA, and other molecules the process by which phosphate groups are removed from a molecule by a phosphatase
Dephosphorylation